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Chapter 17 Insight into Risks in Aquatic Animal Health in Aquaponics

5 months ago

12 min read

Hijran Yavuzcan Yildiz, Vladimir Radosavljevic, Giuliana Parisi, and Aleksandar Cvetkovikj

Abstract Increased public interest in aquaponics necessitates a greater need to monitor fish health to minimize risk of infectious and non-infectious disease outbreaks which result from problematic biosecurity. Fish losses due to health and disease, as well as reporting of poor management practices and quality in produce, which could in a worst-case scenario affect human health, can lead to serious economic and reputational vulnerability for the aquaponics industry. The complexity of aquaponic systems prevents using many antimicrobial/antiparasitic agents or disinfectants to eradicate diseases or parasites. In this chapter, we provide an overview of potential hazards in terms of risks related to aquatic animal health and describe preventive approaches specific to aquaponic systems.

Keywords Aquaponics · Fish health · Biosecurity · Treatment strategies


H. Yavuzcan Yildiz

Department of Fisheries and Aquaculture, Ankara University, Ankara, Turkey

V. Radosavljevic

Department of Fish Diseases, National Reference Laboratory for Fish Diseases, Institute of Veterinary Medicine of Serbia, Belgrade, Serbia

G. Parisi

Department of Agriculture, Food, Environment and Forestry (DAGRI), Animal Science Section, University of Florence, Florence, Italy

A. Cvetkovikj

Department of Parasitology and Parasitic diseases, Faculty of Veterinary Medicine, Ss. Cyril and Methodius University in Skopje, Skopje, Republic of Macedonia

Department of Fisheries, Institute of Animal Science, Ss. Cyril and Methodius University in Skopje, Skopje, Republic of Macedonia

© The Author(s) 2019 435

S. Goddek et al. (eds.), Aquaponics Food Production Systems,


Abd El-Rhman AM, Khattab YAE, Shalaby AME (2009) Micrococcus luteus and Pseudomonas species as probiotics for promoting the growth performance and health of Nile tilapia, Oreochromis niloticus. Fish Shellfish Immunol 27:175—180. 2009.03.020

Afonso A, Matas RG, Maggiore A, Merten C, Robinson T (2017) EFSA's activities on emerging risks in 2016. EFSA Support Publ 14:1—59.

Ahl AS, Acree JA, Gipson PS, McDowell RM, Miller L, McElvaine MD (1993) Standardization of nomenclature for animal health risk analysis. Rev Sci Tech 12:1045—1053

Anderson DP (1992) Immunostimulants, adjuvants, and vaccine carriers in fish: applications to aquaculture. Annu Rev Fish Dis 2:281—307.

Au DWT, Pollino CA, Wu RSS, Shin PKS, Lau STF, Tang JYM (2004) Chronic effects of suspended solids on gill structure, osmoregulation, growth, and triiodothyronine in juvenile green grouper Epinephelus coioides. Mar Ecol Prog Ser 266:255—264. meps266255

Austin B, Austin DA (2016) Bacterial fish pathogens: disease of farmed and wild fish, 6th edn. Springer, Cham.

Aven T (2016) Risk assessment and risk management: review of recent advances on their foundation. Eur J Oper Res 253:1—13.

Bebak-Williams J, Noble A, Bowser P, Wooster G (2007) Fish health management. In: Timmons MB, Ebeling JM (eds) Recirculation aquaculture. Cayuga Aqua Ventures, Ithaca, NY, and Northeastern Regional Aquaculture Center. Publication No. 01-007, p 619—664

Bondad-Reantaso MG, Subasinghe RP (2008) Meeting the future demand for aquatic food through aquaculture: the role of aquatic animal health. In: Fisheries for global welfare and environment, 5th World Fisheries Congress 2008, pp 197—207

Bondad-Reantaso MG, Subasinghe RP, Arthur JR, Ogawa K, Chinabut S, Adlard R, Tan Z, Shariff M (2005) Disease and health management in Asian aquaculture. Vet Parasitol 132:249—272.

Bondad-Reantaso MG, Arthur JR, Subasinghe RP (2008) Understanding and applying risk analysis in aquaculture, FAO Fisheries and Aquaculture Technical Paper No. 519

Brunt J, Austin B (2005) Use of a probiotic to control lactococcosis and streptococcosis in rainbow trout, Oncorhynchus mykiss (Walbaum). J Fish Dis 28:693—701.

Copp GH, Russell IC, Peeler EJ, Gherardi F, Tricarico E, Macleod A, Cowx IG, Nunn AD, Occhipinti-Ambrogi A, Savini D, Mumford J, Britton JR (2016) European non-native species in aquaculture risk analysis scheme — a summary of assessment protocols and decision support tools for use of alien species in aquaculture. Fish Manag Ecol 23:1—11. fme.12074

Das S, Sahoo PK (2014) Markers for selection of disease resistance in fish: a review. Aquac Int 22:1793—1812.

Evenhuis JP, Leeds TD, Marancik DP, LaPatra SE, Wiens GD (2015) Rainbow trout (Oncorhynchus mykiss) resistance to columnaris disease is heritable and favorably correlated with bacterial cold water disease resistance. J Anim Sci 93:1546—1554. jas.2014-8566

Goddek S (2016) Three-loop aquaponics systems: chances and challenges. In: Proceedings of the international conference on Aquaponics Research Matters, Ljubljana, Slovenia, 22 March 2016

Goddek S, Delaide B, Mankasingh U, Ragnarsdottir K, Jijakli H, Thorarinsdottir R (2015) Challenges of sustainable and commercial aquaponics. Sustainability 7:4199—4224. https://

Goddek S, Espinal C, Delaide B, Jijakli M, Schmautz Z, Wuertz S, Keesman K (2016) Navigating towards decoupled aquaponic systems: a system dynamics design approach. Water 8:303.

Henryon M, Berg P, Olesen NJ, Kjær TE, Slierendrecht WJ, Jokumsen A, Lund I (2005) Selective breeding provides an approach to increase resistance of rainbow trout (Oncorhynchus mykiss) to the diseases, enteric redmouth disease, rainbow trout fry syndrome, and viral haemorrhagic septicaemia. Aquaculture 250:621—636.

Huang A-G, Yi Y-L, Ling F, Lu L, Zhang Q-Z, Wang G-X (2013) Screening of plant extracts for anthelmintic activity against Dactylogyrus intermedius (Monogenea) in goldfish (Carassius auratus). Parasitol Res 112:4065—4072.

Junge R, König B, Villarroel M, Komives T, Jijakli MH (2017) Strategic points in aquaponics. Water 9:1—9.

Kabata Z (1985) Parasites and diseases of fish cultured in the tropics. Taylor & Francis, London

Kim D-H, Austin B (2006) Innate immune responses in rainbow trout (Oncorhynchus mykiss, Walbaum) induced by probiotics. Fish Shellfish Immunol 21:513—524. j.fsi.2006.02.007

Koshio S (2016) Immunotherapies targeting fish mucosal immunity — current knowledge and future perspectives. Front Immunol 6:643.

Love DC, Fry JP, Li X, Hill ES, Genello L, Semmens K, Thompson RE (2015) Commercial aquaponics production and profitability: findings from an international survey. Aquaculture 435:67—74.

MacDiarmid SC (1997) Risk analysis, international trade, and animal health. In: Molak V (ed) Fundamentals of risk analysis and risk management. CRC Lewis Publishers, Boca Raton, pp 377—387

Mackenzie R, Burhenne-Guilmin F, La Viña AGM, Werksman JD, Ascencio A, Kinderlerer J, Kummer K, Tapper R (2003) An explanatory guide to the Cartagena protocol on biosafety. IUCN, Gland and Cambridge, UK, p 295

Martin SAM, Król E (2017) Nutrigenomics and immune function in fish: new insights from omics technologies. Dev Comp Immunol 75:86—98.

McIntosh D (2008) Aquaculture risk management. NRAC Publication No. 107. 1 Feb 2018. http://

McLoughlin MF, Graham DA (2007) Alphavirus infections in salmonids - a review. J Fish Dis 30:511—531.

Monsees H, Kloas W, Wuertz S (2017) Decoupled systems on trial: eliminating bottlenecks to improve aquaponic processes. PLoS One 12:e0183056. 0183056

Müller-Graf C, Berthe F, Grudnik T, Peeler E, Afonso A (2012) Risk assessment in fish welfare, applications and limitations. Fish Physiol Biochem 38:231—241. s10695-011-9520-1

Noga E (2010) Fish disease: diagnosis and treatment, 2nd edn. Wiley-Blackwell, Ames. https://doi. org/10.1002/9781118786758

Nowak BF (2004) Assessment of health risks to southern bluefin tuna under current culture conditions. Bull Eur Assoc Fish Pathol 24:45—51

Oidtmann B, Peeler E, Lyngstad T, Brun E, Bang Jensen B, Stärk KDC (2013) Risk-based methods for fish and terrestrial animal disease surveillance. Prev Vet Med 112:13—26. 1016/j.prevetmed.2013.07.008

OIE (2017) Aquatic animal health code. Office International des Epizooties, Paris. 1 Feb 2018.

Othman F, Islam MS, Sharifah EN, Shahrom-Harrison F, Hassan A (2015) Biological control of streptococcal infection in Nile Tilapia Oreochromis niloticus (Linnaeus, 1758) using filterfeeding bivalve mussel Pilsbryocon chaexilis (Lea, 1838). J Appl Ichthyol 31:724—728.

Palm HW, Seidemann R, Wehofsky S, Knaus U (2014a) Significant factors affecting the economic sustainability of closed aquaponic systems. Part I: system design, chemo-physical parameters and general aspects. AACL Bioflux 7:20—32

Palm HW, Bissa K, Knaus U (2014b) Significant factors affecting the economic sustainability of closed aquaponic systems. Part II: fish and plant growth. AACL Bioflux 7:162—175

Park K-H, Choi S-H (2012) The effect of mistletoe, Viscum album coloratum, extract on innate immune response of Nile Tilapia (Oreochromis niloticus). Fish Shellfish Immunol 32:1016—1021.

Parker R (2012) Aquaculture science, 3rd edn. Delmar, Cengage Learning, Clifton Park

Peeler EJ, Taylor NG (2011) The application of epidemiology in aquatic animal health -opportunities and challenges. Vet Res 42:94.

Peeler EJ, Murray AG, Thebault A, Brun E, Giovaninni A, Thrush MA (2007) The application of risk analysis in aquatic animal health management. Prev Vet Med 81:3—20. 1016/j.prevetmed.2007.04.012

Picón-Camacho SM, Leclercq E, Bron JE, Shinn AP (2012) The potential utility of the leopard pleco (Glyptoperichthys gibbiceps) as a biological control of the ciliate protozoan Ichthyophthirius multifiliis. Pest Manag Sci 68:557—563.

Plumb JA, Hanson LA (2011) Health maintenance and principal microbial diseases of cultured fishes, 3rd edn. Wiley-Blackwell, Oxford.

Rakocy J (2012) Aquaponics-integrating fish and plant culture. In: Tidwell J (ed) Aquaculture production systems. Wiley-Blackwell, Ames, pp 343—386. 9781118250105

Rakocy JE, Masser MP, Losordo TM (2006) Recirculating aquaculture tank production systems: aquaponics- integrating fish and plant culture. SRAC Publication No. 454. 1 Feb 2018.

Reverter M, Bontemps N, Lecchini D, Banaigs B, Sasal P (2014) Use of plant extracts in fish aquaculture as an alternative to chemotherapy: current status and future perspectives. Aquaculture 433:50—61.

Rivera-Torres O (2003) The biosafety protocol and the WTO, 26 B.C. Int Comp L Rev 263, http://

Sharma A, Deo AD, Riteshkumar ST, Chanu TI, Das A (2010) Effect of Withania somnifera (L. Dunal) root as a feed additive on immunological parameters and disease resistance to Aeromonas hydrophila in Labeo rohita(Hamilton) fingerlings. Fish Shellfish Immunol 29:508—512.

Sirakov I, Lutz M, Graber A, Mathis A, Staykov Y, Smits T, Junge R (2016) Potential for combined biocontrol activity against fungal fish and plant pathogens by bacterial isolates from a model aquaponic system. Water 8:518.

Sitjà-Bobadilla A, Oidtmann B (2017) Integrated pathogen management strategies in fish farming. In: Jeney G (ed) Fish diseases: prevention and control strategies. Academic, London, pp 119—144.

Skiftesvik AB, Bjelland RM, Durif CMF, Johansen IS, Browman HI (2013) Delousing of Atlantic salmon (Salmo salar) by cultured vs. wild ballan wrasse (Labrus bergylta). Aquaculture 402—403:113—118.

Snieszko SF (1974) The effects of environmental stress on outbreaks of infectious diseases of fishes. J Fish Biol 6:197—208

Somerville C, Cohen M, Pantanella E, Stankus A, Lovatelli A (2014) Small-scale aquaponic food production. Integrated fish and plant farming. FAO Fisheries and Aquaculture, Rome

Sterling P, Eyer J (1988) Allostasis: a new paradigm to explain arousal pathology. In: Fischer S, Reason J (eds) Handbook of life stress, cognition and health. Wiley, Chichester, pp 629—639

Subasinghe RP (2005) Epidemiological approach to aquatic animal health management: opportunities and challenges for developing countries to increase aquatic production through aquaculture. Prev Vet Med 67:117—124.

Tacchi L, Bickerdike R, Douglas A, Secombes CJ, Martin SAM (2011) Transcriptomic responses to functional feeds in Atlantic salmon (Salmo salar). Fish Shellfish Immunol 31:704—715. https://

UN (2017) United Nations, Department of Economic and Social Affairs, Population Division, World Population Prospects 2017 - Data Booklet (ST/ESA/SER.A/401). 1 Feb 2018. https://esa.

Vasudeva Rao Y, Das BK, Jyotyrmayee P, Chakrabarti R (2006) Effect of Achyranthes aspera on the immunity and survival of Labeo rohita infected with Aeromonas hydrophila. Fish Shellfish Immunol 20:263—273.

Winton J (2002) Fish health management. In: Wedemayer G (ed) Fish hatchery management, 2nd edn. American Fisheries Society, Bethesda, pp 559—640

Xue S, Xu W, Wei J, Sun J (2017) Impact of environmental bacterial communities on fish health in marine recirculating aquaculture systems. Vet Microbiol 203:34—39. vetmic.2017.01.034

Yavuzcan Yıldız H, Seçer SF (2017) Stress and fish health: towards an understanding of allostatic load. In: Berillis P (ed) Trends in fisheries and aquatic animal health. Bentham Science Publishers, Sharjah, pp 133—154.

Yavuzcan Yildiz H, Robaina L, Pirhonen J, Mente E, Domínguez D, Parisi G (2017) Fish welfare in aquaponic systems: its relation to water quality with an emphasis on feed and faeces-a review. Water 9:13.

Yi Y-L, Lu C, Hu X-G, Ling F, Wang G-X (2012) Antiprotozoal activity of medicinal plants against Ichthyophthirius multifiliis in goldfish (Carassius auratus). Parasitol Res 111:1771—1778.

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